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Research

Our Key Science Themes

ESIIL’s key science themes include: extreme disturbances and climate, biodiversity and community dynamics, ecosystem stability and resilience, food webs and nutrient flows, and evolutionary patterns. We also study how to best teach and learn Environmental Data Science and what makes collaborative, productive teams. These themes reflect both the diversity of scientific inquiry and the shared vision across the network. 

What sets ESIIL’s science apart is not just its breadth, but how the work is done. The ESIIL network capitalizes on the unprecedented availability of social-environmental data, employing cutting-edge techniques for integration and synthesis, such as harmonizing disparate datasets across spatial, temporal, and disciplinary boundaries. This work is underpinned by a robust and growing cyberinfrastructure, enabling scalable, cloud-based analytics and providing the broader research community with essential training and tools for working with big data. And finally, ESIIL science incorporates different ways of knowing including art-science collaborations and bringing together traditional ecological knowledge with western science. Together, by capitalizing on the wealth of data, AI techniques, and large team collaboration, the ESIIL network and approach has led to new insights and discoveries to address environmental challenges. 

Cyberinfrastructure

Open Analysis and Synthesis Infrastructure for Science (OASIS)

OASIS is a unified digital hub centralizing critical resources and collaboration tools, making it easier for Environmental Data Science teams to access information and work together seamlessly. We invested in building OASIS to streamline workflows and drive efficiency by integrating diverse systems into a single, user-friendly platform that supports data-driven decision-making.The platform was developed to future-proof our operations, ensuring scalability and adaptability as our organizational needs evolve.

Using research-based best practices to facilitate collaboration within the center

The Science of Team Science

We develop processes and procedures based on proven practices that reduce barriers and promote collaboration in our meetings, training opportunities, and workshops. 

Incorporating evaluation throughout ESIIL’s journey

Evaluation

The ESIIL Evaluation Team engages in Collaborative Evaluation activities involving ESIIL leadership, subteams, and advisory board members. These activities contribute to the iterative development and improvement of the synthesis center, the ESIIL community, and all ESIIL activities.  

Open communication, iterative feedback and recommendations from the evaluation team support the continual growth of the center.

Post-Doctoral Research

Biotic Niche Modeling

Dr. Robert Ramos’ research on species niche dynamics.

Characterizing Dissolved Oxygen Dynamics on Coral Reefs

Dr. Wyatt Million is a marine ecologist focusing on tropical coral reefs, acclimatization and adaptation to climate chan...

Data-Driven Science for Sustainable Land Management

Dr. Brian Lee is a landscape ecologist who uses remote sensing fusion and machine learning to quantify ecosystem service...

LTER Material Legacies

Dr. Kai Kopecky's cross-system comparison exploring how the material legacies of foundation species influence demography...

Nutrient Flows

Dr. Keiko Nomura’s analysis of seafood trade and sustainability.

Optimization for Conservation Decisions

Dr. Cassie Buhler's project utilizes open science, optimization, and AI to support spatial planning and decision-making ...

Spatiotemporal Representations for Geospatial AI models

Dr. Levi "VeeVee" Cai's research lies at the intersection of AI, robotics, and (mostly marine) ecology. His work at ESII...

Sustainability and Ecosystem Integration

Dr. Min-Gon Chung is an environmental and sustainability researcher using systems modeling to address the complex issues...

Team Science: Innovation and Collaboration

Dr. Kayleigh Ward is advancing the science of team science by identifying and observing how interdisciplinary EDS and sy...

Tundra Shrub Expansion

Dr. Katya Jay's tundra shrub expansion repository

Publications

Cambridge University Press

Island Time: Theory Groups and the Social Production of Scientific Knowledge (1st ed.)

Parker, John. (2025)
Ecology Letters, 28, no. 8: e70192

A Causal Inference Framework for Climate Change Attribution in Ecology

Dudney, J., L. E. Dee, R. Heilmayr, J. Byrnes, and K. Siegel. 2025.
Discover Water, 6, 15

Spatial variation in microbial enzyme activity in an intermittent stream network

Andrielle L Kemajou Tchamba, Charles T Bond, Brett A Nave, Jr, Robert Ramos, Erin C Seybold, Amy J Burgin, Ken Aho, Yaqi...
Ecological Adaptions, Vol 36, Issue 3

Fire lines adjacent to aspen are unlikely to hold during extreme burning conditions in southern Rocky Mountain forests

Trevor A Carter, Jennifer K Balch, Maxwell C Cook, Sarah J Hart. (2026)
Environmental Research: Food Systems, Volume 3, Issue 2

Ocean acidification and blue food security: mapping two overlapping regime complexes

Annika Frosch, Keiko J Nomura and Inken Dressler (2026)
Ecology Letters, Volume 28, Issue 1

Foundations and future directions for causal inference in ecological research

Katherine Siegel & Laura E. Dee (2025)
Ecological Applications, Volume 35, Issue 5

Removing dead coral after marine heatwaves can mitigate coral–algae competition and increase viable coral recruitment

Kopecky, Kai L., Gaia Pavoni, Massimiliano Corsini, Andrew J. Brooks, Bartholomew P. DiFiore, Fabio Menna, and Erica Noc...
Natural Hazards, Volume 121, Pages 16719-16745

Pantanal wetland wildfires are associated with drought in interconnected biomes

de Sousa, Bruna Rodrigues, Humberto Paiva Fonseca, Santiago Maria Márquez Arévalo, Alexandre Simões Lorenzon, Fillipe Ta...
Science of The Total Environment, Volume 1001

Valuing co-benefits of forest fuels treatment for reducing wildfire risk in California's Sierra Nevada

Guo, Han, Michael Goulden, Min Gon Chung, Qingqing Xu, Charity Nyelele, Weichao Guo, Benis Egoh et al. (2025)
Journal of Environmental Management, Volume 392

RAD (Resist-Accept-Direct) switch points and triggers for adaptation planning

Lynch, A.J., Ashander, J.D., Ciocco, T.W., Cravens, A.E., Dassow, C.J., Dee, L.E., Dunham, J.B., Eaton, M.J., Embke, H.S...
Global Ecology and Conservation, Volume 63

Anthropogenic disturbances shape functional composition and diversity in Brazilian savanna: Contrasting effects of local and landscape-scale drivers

Alex Josélio Pires Coelho, Fernando Silla, Luiz Fernando Silva Magnago, Fabio Antônio Ribeiro Matos, Gustavo Heringer, N...
Biological Conservation, Volume 313

Understanding deforestation dynamics in Amazonian protected areas through land-use change models informed by conservation discourses

Siegel, K.J., Mills-Novoa, M, Kinnebrew, E., Ochoa-Brito, J. and Shoffner, E. (2026)
New Phytologist, Volume 249, Issue 3

Plant functional trait uncertainty can outweigh climate scenario uncertainty in tundra ecosystem productivity

Jay, Katya R., William R. Wieder, Sarah C. Elmendorf, Marko J. Spasojevic, & Katharine N. Suding. (2026)
Fish and Fisheries, Volume 27, Issue 3

Fisheries Trade and Blue Nutrient Flows in Pacific Island Countries

Nomura, Keiko J., Steven Manaʻoakamai Johnson, Jessica Gephart, & Jacob G. Eurich. (2026)
Boletim de Ciências Geodésicas, Volume 32

Hierarchical multistep remote sensing classification enhances land use mapping accuracy in anthropogenically modified landscapes

Domingues, Getulio Fonseca, Marcos Vinícius de Campos Meneses E. Silva, Sofia Corradi Oliveira, Marcelo Antônio Nero, Ma...
Communications Sustainability, Volume 1, Issue 29

Riparian vegetation reduces coastal turbidity

Brumberg, Hilary D., Laura E. Dee, Hikari Murayama, Juan José Alvarado Barrientos, Brooke Bessesen, Marie G. Bouffard, M...
Science Advances, Volume 12, Issue 24

Legacies of foundation species shape life after death

Kopecky, Kai L., Max CN Castorani, Ty Tuff, Audrey Barker Plotkin, David M. Bell, Jill F. Johnstone, John S. Kominoski e...
Ecological Informatics, Volume 96

Conifer seedling mapping with UAS data and supervised learning in postfire southern Rockies landscapes

Nayani Ilangakoon, Tyler L. McIntosh, Katie Ellis, Steelle S. Scearce, Ian MacKeigan, Pavan Appanna, Nathaniel P. Hoffor...
Drylands, Volume 3

An overview of the NASA Adaptation and Response in Drylands field experiment scoping study

Feldman, Andrew F., Sasha C. Reed, Konrad Wessels, Dennis Ojima, David J.P. Moore, William K. Smith, Niall Hanan, et al....
Nature Communications, Volume 17

Best practices for moving from correlation to causation in ecological research

Correia, H.E., Dee, L.E., Byrnes, J.E.K., Siegel, K. et al. (2026)
The ISME Journal, Volume 20, Issue 1

One hundred unanswered questions on the dispersal ecology of fungi

Sarah A Cuprewich, Kristin M Barbour, Michelle E Afkhami, Kira M T Lynn, Adriana L Romero-Olivares, Carlos Aguilar-Trigu...
Environmental Sociology, 1–15

Values at the Tap: How Organizational Culture Shapes Water Unaffordability and Environmental Justice in U.S. Cities.

Ward, K., Srinivasan, J., Alvord, D., Senier, L., Davis, M., Harlan, S. L., … Deodhar, A. (2026)
Global Change Biology, Volume 32, Issue 5

Multi-Decadal Dynamics of Wetland Methane Emissions Revealed by Knowledge-Guided Machine Learning

Zhu, Q., K. A. Arndt, K. Yuan, et al. 2026.
Fire, Volume 9, Issue 5

Fires of Unusual Size: Future of Extreme and Emerging Wildfire in a Warming United States (2020–2060)

Stephens, Jilmarie, Maxwell Joseph, Matthew E. Bitters, Virginia Iglesias, Ty Tuff, Adam Mahood, Imtiaz Rangwala, Jane W...
Remote Sensing Volume 16, Issue 9, 1619

Mapping Quaking Aspen Using Seasonal Sentinel-1 and Sentinel-2 Composite Imagery across the Southern Rockies, USA

Maxwell Cook,Teresa Chapman, Sarah Hart, Asha Paudel and Jennifer Balch (2024)
Mycorrhiza Volume 34, pages 369-373

An updated LSU database and pipeline for environmental DNA identification of arbuscular mycorrhizal fungi

Camille S. Delavaux, Robert J. Ramos, Sidney L. Stürmer & James D. Bever (2024)
Ecology and Evolution Volume 15, Issue 1, e70597

Uncovering Diversity within the Glomeromycota: Novel Clades, Family Distributions, and Land Use Sensitivity

Camille S. Delavaux, Alexis Aellen, Sidney L. Stürmer, Silmar Primieri, Ursel M. E. Schütte, Devin M. Drown, Robert J. R...
Global Change Biology Volume 31, Issue 4, e70209

Forest Degradation Is Undermining Progress on Deforestation in the Amazon

Mataveli et al (2025)
Estuaries and Coasts Volume 48, article number 60

Quantifying the Relative Importance of Sand Deposition and Dune Grasses to Carbon Storage in US Central Atlantic Coast Dunes

Katya R. Jay, Sally D. Hacker, Cedric J. Hagen, John Stepanek, Laura J. Moore & Peter Ruggiero (2025)
Sensors 25(2), 308

Spatial Characterization of Woody Species Diversity in Tropical Savannas Using GEDI and Optical Data

Rex et al. (2025)
Journal of Applied Ecology Volume 62, Issue 2, Pages 188-206

Remote sensing approaches to monitor tropical forest restoration: Current methods and future possibilities

de Almeida et al. (2024)
Nature Climate Change Volume 14, Pages 916–928

Pushing the frontiers in climate modelling and analysis with machine learning

Eyring et al. (2024)
Global Change Biology Volume 30, Issue 9, e17504

Changing disturbance regimes, material legacies, and stabilizing feedbacks: Dead coral skeletons impair key recovery processes following coral bleaching

Kai L. Kopecky, Sally J. Holbrook, Emalia Partlow, Madeline Cunningham, and Russell J. Schmitt (2024)
Nature Vol 386, Issue 6720, pp. 425-431

The fastest-growing and most destructive fires in the US (2001 to 2020)

Balch et al. (2024)
Nature 634, 1041-1044

Extreme fire seasons are looming — science can help us adapt

Jennifer K. Balch and A. Park Williams (2024)
Earth's Future Volume 12, Issue 9, e2024EF004811

Adaptation and Response in Drylands (ARID): Community Insights for Scoping a NASA Terrestrial Ecology Field Campaign in Drylands

Feldman et al. (2024)
Remote Sensing in Ecology and Conservation Volume 11, Issue 2, Pages 133-155

Leveraging the next generation of spaceborne Earth observations for fuel monitoring and wildland fire management

Leite et al. (2024)
Artificial Intelligence for the Earth Systems Volume 3: Issue 4

Multidecadal Sea Level Prediction Using Neural Networks and Spectral Clustering on Climate Model Large Ensembles and Satellite Altimeter Data

Saumya Sinha, John Fasullo, R. Steven Nerem, and Claire Monteleoni (2024)
Molecular Plant, Volume 17, Issue 6, p848-866

Satellite-enabled enviromics to enhance crop improvement

Rafael T. Resende, Lee Hickey, Cibele H. Amaral, Lucas L. Peixoto, Gustavo E. Marcatti, Yunbi Xu (2024)
Ecohydrology Volume 17, Issue 3, e2642

Valuation of forest‐management and wildfire disturbance on water and carbon fluxes in mountain headwaters

Chung et al. (2024)
Nature 627, 273-274

Drought-fuelled overnight burning propels large fires in North America

Jennifer K. Balch and Adam L. Mahood (2024)
PEARC '23 Conference Proceedings; Pages 367 - 373

Cyberinfrastructure deployments on public research clouds enable accessible Environmental Data Science education

McIntosh et al. (2024)
Applied Sciemces 2023, 13(19), 11034

Environmental Resilience Technology: Sustainable Solutions Using Value-Added Analytics in a Changing World

Stavros et al. (2023)
Ecology Volume 104, Issue3, e3968

Fuel connectivity, burn severity, and seedbank survivorship drive ecosystem transformation in a semiarid shrubland

Adam L. Mahood, Michael J. Koontz, Jennifer K. Balch (2023)
Peer Community Journal, Volume 3, article no. e4

Ten simple rules for working with high resolution remote sensing data

Mahood et al. (2023)